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Inheritance ยป Base Pairing Rules

What you'll learn this session

Study time: 30 minutes

  • Understand the structure of DNA and its four bases
  • Learn Chargaff's base pairing rules and complementary base pairs
  • Discover how base pairing enables DNA replication
  • Explore the role of base pairing in protein synthesis
  • Apply base pairing rules to solve genetic problems
  • Understand how mutations affect base pairing

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Introduction to Base Pairing Rules

DNA is like a twisted ladder called a double helix. The rungs of this ladder are made up of pairs of chemicals called bases. Understanding how these bases pair up is crucial for understanding inheritance, as it explains how genetic information is copied and passed from parents to offspring.

Key Definitions:

  • DNA: Deoxyribonucleic acid - the molecule that carries genetic information in all living things.
  • Base: One of four chemical units (A, T, G, C) that make up the rungs of the DNA ladder.
  • Complementary base pairing: The specific way bases pair together - A with T and G with C.
  • Double helix: The twisted ladder shape of DNA.

🔗 The Four DNA Bases

DNA contains four different bases: Adenine (A), Thymine (T), Guanine (G) and Cytosine (C). Think of them as four different shaped puzzle pieces that only fit together in specific ways.

Chargaff's Discovery

In the 1950s, scientist Erwin Chargaff made a groundbreaking discovery. He found that in any sample of DNA, the amount of adenine always equals the amount of thymine and the amount of guanine always equals the amount of cytosine. This became known as Chargaff's rule.

The Base Pairing Rules

Based on Chargaff's work and later discoveries, we now know the exact pairing rules:

🤝 A pairs with T

Adenine always pairs with Thymine using 2 hydrogen bonds. Remember: 'A'pples go with 'T'rees!

🤝 G pairs with C

Guanine always pairs with Cytosine using 3 hydrogen bonds. Remember: 'G'ood 'C'ars stick together!

🔥 Why These Rules?

The bases pair this way because of their chemical structure. They fit together perfectly like lock and key.

Case Study Focus: Watson and Crick

James Watson and Francis Crick used Chargaff's base pairing rules, along with X-ray crystallography data from Rosalind Franklin, to work out the double helix structure of DNA in 1953. This discovery revolutionised our understanding of genetics and earned them the Nobel Prize.

How Base Pairing Works in DNA Structure

Imagine DNA as a twisted rope ladder. The sides of the ladder are made of sugar and phosphate molecules, whilst the rungs are the paired bases. Each rung consists of two bases held together by hydrogen bonds.

📈 The Double Helix

The two strands of DNA run in opposite directions (antiparallel). One strand goes from 5' to 3' direction, whilst its partner runs 3' to 5'. The bases in the middle follow the pairing rules perfectly.

Base Pairing in DNA Replication

When cells divide, they need to copy their DNA so each new cell gets a complete set of genetic instructions. Base pairing rules make this possible through a process called semi-conservative replication.

How it works:

  1. The DNA double helix unzips down the middle, separating the two strands
  2. Each single strand acts as a template
  3. New bases are added following the pairing rules (A with T, G with C)
  4. Two identical DNA molecules are formed, each containing one old and one new strand

Base Pairing in Protein Synthesis

Base pairing rules also apply when DNA information is used to make proteins, though with a slight twist. During transcription, DNA is copied into RNA (ribonucleic acid).

🔄 RNA Base Pairing

In RNA, Uracil (U) replaces Thymine (T). So the pairing rules become: A pairs with U, T pairs with A, G pairs with C and C pairs with G.

Practical Applications

Understanding base pairing rules helps us solve many biological puzzles:

🔍 DNA Analysis

If we know the sequence of one DNA strand, we can work out the complementary strand using base pairing rules.

🤖 Genetic Engineering

Scientists use base pairing to design specific DNA sequences for medical treatments and research.

💫 DNA Fingerprinting

Base pairing helps in comparing DNA samples for forensic investigations and paternity tests.

When Base Pairing Goes Wrong

Sometimes mistakes happen during DNA replication. These errors, called mutations, can occur when the wrong base is paired or when bases are missed or added.

Case Study Focus: Sickle Cell Anaemia

This genetic condition is caused by a single base change in the DNA. Just one A is changed to a T in the gene for haemoglobin. This tiny change in base pairing leads to misshapen red blood cells that can't carry oxygen properly, showing how crucial correct base pairing is for health.

Types of Base Pairing Errors

Several types of mutations can affect base pairing:

  • Substitution: One base is swapped for another (e.g., A becomes G)
  • Insertion: An extra base is added to the sequence
  • Deletion: A base is removed from the sequence

Fortunately, cells have proofreading mechanisms that catch and fix most errors during DNA replication, maintaining the accuracy of base pairing.

Memory Tricks for Base Pairing

Here are some helpful ways to remember the base pairing rules:

🧠 Memory Aids

For DNA:
โ€ข A and T: 'Apples and Trees'
โ€ข G and C: 'Grapes and Cherries'

For RNA:
โ€ข A and U: 'Apples are Unique'
โ€ข G and C: Still 'Grapes and Cherries'

Testing Your Understanding

Let's practice with some examples. If one strand of DNA has the sequence ATGCTA, what would the complementary strand be?

Using the base pairing rules:

  • A pairs with T
  • T pairs with A
  • G pairs with C
  • C pairs with G
  • T pairs with A
  • A pairs with T

So the complementary strand would be: TACGAT

Real-World Connection

Base pairing rules are fundamental to modern medicine. PCR (Polymerase Chain Reaction) testing, used for COVID-19 diagnosis, relies on these rules to amplify tiny amounts of viral DNA or RNA. The test uses complementary base pairing to identify specific genetic sequences that match the virus.

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